PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G103100.1.p
Common NameDREBa, GLYMA_12G103100, LOC100788110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 212aa    MW: 23148.9 Da    PI: 7.3841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G103100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-1865115155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta  Aa a+++a+ +++g
  Glyma.12G103100.1.p  65 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAISAALAYDEAAMAMYG 115
                          56*****999.**********8...3.35***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-1365115IPR001471AP2/ERF domain
CDDcd000181.62E-2965125No hitNo description
Gene3DG3DSA:3.30.730.104.6E-3166124IPR001471AP2/ERF domain
SMARTSM003804.3E-3566129IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2166123IPR016177DNA-binding domain
PROSITE profilePS5103221.90466123IPR001471AP2/ERF domain
PRINTSPR003671.4E-96778IPR001471AP2/ERF domain
PRINTSPR003671.4E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MHMLVKNHNK GDGSKSLADT LAKWKEYNAW LESNNEAEKP VRKVPAKGSK KGCMKGKGGP  60
ENLRCNYRGV RQRTWGKWVA EIREPNRGSR LWLGTFPTAI SAALAYDEAA MAMYGFCARL  120
NFPNVQVSTF SEEPSRNSPA AAYQSRNSPS AKESGSALVI LERSECMMLW NNSGGDAAED  180
DGMEDLSLSL SVKHEEGEDE SGTSSSYLSL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1866123563ATERF1
3gcc_A4e-1866123563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.570390.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5428860.0AY542886.1 Glycine max DREBa transcription factor (DREBa) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539883.11e-156PREDICTED: putative dehydration-responsive element-binding protein 2H
SwissprotA2WL194e-50DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
SwissprotQ0JQF74e-50DRE2A_ORYSJ; Dehydration-responsive element-binding protein 2A
TrEMBLQ4QY921e-156Q4QY92_SOYBN; DREBa transcription factor
STRINGGLYMA12G11150.31e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.24e-33DRE-binding protein 2A
Publications ? help Back to Top
  1. Li XP, et al.
    Soybean DRE-binding transcription factors that are responsive to abiotic stresses.
    Theor. Appl. Genet., 2005. 110(8): p. 1355-62
    [PMID:15841365]